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LOC102594971 myb-like protein J [ Solanum tuberosum (potato) ]

Gene ID: 102594971, updated on 2-Nov-2023

Summary

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Gene symbol
LOC102594971
Gene description
myb-like protein J
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum tuberosum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Genomic context

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See LOC102594971 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
101 current SolTub_3.0 (GCF_000226075.1) Unplaced Scaffold NW_006238991.1 (851841..853499)

NW_006238991.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107060205 Neighboring gene inactive protein kinase SELMODRAFT_444075-like Neighboring gene K(+) efflux antiporter 4-like Neighboring gene uncharacterized LOC102590083 Neighboring gene uncharacterized LOC107060206

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238991.1 Unplaced Scaffold Reference SolTub_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in response to auxin IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to ethylene IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to gibberellin IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
myb-like protein J

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum tuberosum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SolTub_3.0 Primary Assembly

Genomic

  1. NW_006238991.1 Reference SolTub_3.0 Primary Assembly

    Range
    851841..853499
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006345272.2 → XP_006345334.1  myb-like protein J

    UniProtKB/TrEMBL
    M1AKK6
    Conserved Domains (2) summary
    TIGR01557
    Location:109 → 161
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    smart00717
    Location:114 → 160
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
Nucleotide Protein
Heading Accession and Version

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