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LOC102593066 beta-amylase 7 [ Solanum tuberosum (potato) ]

Gene ID: 102593066, updated on 2-Nov-2023

Summary

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Gene symbol
LOC102593066
Gene description
beta-amylase 7
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum tuberosum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Genomic context

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See LOC102593066 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current SolTub_3.0 (GCF_000226075.1) Unplaced Scaffold NW_006238936.1 (2080937..2089977, complement)

NW_006238936.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L36-2-like Neighboring gene uncharacterized LOC102592724 Neighboring gene uncharacterized LOC107062227 Neighboring gene gibberellin 3-beta-dioxygenase 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238936.1 Unplaced Scaffold Reference SolTub_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-amylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in polysaccharide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-amylase 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum tuberosum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SolTub_3.0 Primary Assembly

Genomic

  1. NW_006238936.1 Reference SolTub_3.0 Primary Assembly

    Range
    2080937..2089977 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006339504.2 → XP_006339566.1  beta-amylase 7

    See identical proteins and their annotated locations for XP_006339566.1

    UniProtKB/TrEMBL
    M0ZGT7
    Conserved Domains (1) summary
    cl38930
    Location:1 → 692
    AmyAc_family; Alpha amylase catalytic domain family

  2. XM_006339503.2 → XP_006339565.1  beta-amylase 7

    See identical proteins and their annotated locations for XP_006339565.1

    UniProtKB/TrEMBL
    M0ZGT7
    Conserved Domains (1) summary
    cl38930
    Location:1 → 692
    AmyAc_family; Alpha amylase catalytic domain family

  3. XM_006339502.2 → XP_006339564.1  beta-amylase 7

    See identical proteins and their annotated locations for XP_006339564.1

    UniProtKB/TrEMBL
    M0ZGT7
    Conserved Domains (1) summary
    cl38930
    Location:1 → 692
    AmyAc_family; Alpha amylase catalytic domain family
Nucleotide Protein
Heading Accession and Version

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