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LOC102590949 probable WRKY transcription factor 40 [ Solanum tuberosum (potato) ]

Gene ID: 102590949, updated on 2-Nov-2023

Summary

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Gene symbol
LOC102590949
Gene description
probable WRKY transcription factor 40
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum tuberosum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Genomic context

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See LOC102590949 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
101 current SolTub_3.0 (GCF_000226075.1) Unplaced Scaffold NW_006238952.1 (45278..47885, complement)

NW_006238952.1Genomic Context describing neighboring genes Neighboring gene photosynthetic NDH subunit of subcomplex B 1, chloroplastic Neighboring gene uncharacterized LOC102594169 Neighboring gene metal transporter Nramp6 Neighboring gene cinnamoyl CoA reductase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006238952.1 Unplaced Scaffold Reference SolTub_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable WRKY transcription factor 40

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum tuberosum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SolTub_3.0 Primary Assembly

Genomic

  1. NW_006238952.1 Reference SolTub_3.0 Primary Assembly

    Range
    45278..47885 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006341622.2 → XP_006341684.1  probable WRKY transcription factor 40

    UniProtKB/TrEMBL
    M1BR79
    Conserved Domains (1) summary
    smart00774
    Location:167 → 225
    WRKY; DNA binding domain
Nucleotide Protein
Heading Accession and Version

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