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LOC102582834 scarecrow-like protein 21 [ Solanum tuberosum (potato) ]

Gene ID: 102582834, updated on 2-Nov-2023

Summary

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Gene symbol
LOC102582834
Gene description
scarecrow-like protein 21
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum tuberosum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Genomic context

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See LOC102582834 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
101 current SolTub_3.0 (GCF_000226075.1) Unplaced Scaffold NW_006239363.1 (63130..66117)

NW_006239363.1Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase kinase kinase 3-like Neighboring gene dihydroflavonol-4-reductase-like Neighboring gene glycine-rich RNA-binding protein 3, mitochondrial-like Neighboring gene 60S ribosomal protein L8-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006239363.1 Unplaced Scaffold Reference SolTub_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
scarecrow-like protein 21

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum tuberosum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SolTub_3.0 Primary Assembly

Genomic

  1. NW_006239363.1 Reference SolTub_3.0 Primary Assembly

    Range
    63130..66117
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006363445.2 → XP_006363507.1  scarecrow-like protein 21

    UniProtKB/TrEMBL
    M1BYZ5
    Conserved Domains (1) summary
    pfam03514
    Location:189 → 558
    GRAS; GRAS domain family
Nucleotide Protein
Heading Accession and Version

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