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LOC102582383 squamosa promoter-binding protein 1 [ Solanum tuberosum (potato) ]

Gene ID: 102582383, updated on 2-Nov-2023

Summary

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Gene symbol
LOC102582383
Gene description
squamosa promoter-binding protein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum tuberosum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Genomic context

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See LOC102582383 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
101 current SolTub_3.0 (GCF_000226075.1) Unplaced Scaffold NW_006239015.1 (184037..187405, complement)

NW_006239015.1Genomic Context describing neighboring genes Neighboring gene glyoxysomal processing protease, glyoxysomal Neighboring gene mitochondrial arginine transporter BAC1 Neighboring gene dof zinc finger protein DOF1.4-like Neighboring gene dof zinc finger protein DOF3.1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006239015.1 Unplaced Scaffold Reference SolTub_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in flower development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
squamosa promoter-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum tuberosum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SolTub_3.0 Primary Assembly

Genomic

  1. NW_006239015.1 Reference SolTub_3.0 Primary Assembly

    Range
    184037..187405 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006346949.2 → XP_006347011.1  squamosa promoter-binding protein 1 isoform X3

    Conserved Domains (1) summary
    pfam03110
    Location:52 → 97
    SBP; SBP domain

  2. XM_006346947.2 → XP_006347009.1  squamosa promoter-binding protein 1 isoform X1

    Conserved Domains (1) summary
    pfam03110
    Location:52 → 99
    SBP; SBP domain

  3. XM_006346948.2 → XP_006347010.1  squamosa promoter-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    M1CWP0
    Conserved Domains (1) summary
    pfam03110
    Location:52 → 125
    SBP; SBP domain
Nucleotide Protein
Heading Accession and Version

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