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LOC102581535 GATA transcription factor 16-like [ Solanum tuberosum (potato) ]

Gene ID: 102581535, updated on 2-Nov-2023

Summary

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Gene symbol
LOC102581535
Gene description
GATA transcription factor 16-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum tuberosum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Genomic context

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See LOC102581535 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
101 current SolTub_3.0 (GCF_000226075.1) Unplaced Scaffold NW_006239038.1 (495154..497458, complement)

NW_006239038.1Genomic Context describing neighboring genes Neighboring gene protein DEHYDRATION-INDUCED 19 homolog 4-like Neighboring gene two-component response regulator ARR2 Neighboring gene acetate/butyrate--CoA ligase AAE7, peroxisomal-like Neighboring gene calmodulin-binding transcription activator 6-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006239038.1 Unplaced Scaffold Reference SolTub_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GATA transcription factor 16-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum tuberosum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SolTub_3.0 Primary Assembly

Genomic

  1. NW_006239038.1 Reference SolTub_3.0 Primary Assembly

    Range
    495154..497458 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006349767.2 → XP_006349829.1  GATA transcription factor 16-like

    UniProtKB/TrEMBL
    M1A053, M1A054
    Conserved Domains (2) summary
    smart00401
    Location:31 → 67
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    pfam00320
    Location:33 → 67
    GATA; GATA zinc finger
Nucleotide Protein
Heading Accession and Version

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