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LOC102579710 transcription factor VIP1 [ Solanum tuberosum (potato) ]

Gene ID: 102579710, updated on 2-Nov-2023

Summary

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Gene symbol
LOC102579710
Gene description
transcription factor VIP1
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum tuberosum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Genomic context

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Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current SolTub_3.0 (GCF_000226075.1) Unplaced Scaffold NW_006239340.1 (432121..438351, complement)

NW_006239340.1Genomic Context describing neighboring genes Neighboring gene serine decarboxylase-like Neighboring gene abscisic acid 8'-hydroxylase 3-like Neighboring gene abscisic acid 8'-hydroxylase 3-like Neighboring gene vacuolar iron transporter homolog 1-like Neighboring gene uncharacterized LOC102580694

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006239340.1 Unplaced Scaffold Reference SolTub_3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor VIP1
Names
repression of shoot growth

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum tuberosum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SolTub_3.0 Primary Assembly

Genomic

  1. NW_006239340.1 Reference SolTub_3.0 Primary Assembly

    Range
    432121..438351 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006362762.2 → XP_006362824.1  transcription factor VIP1

    UniProtKB/TrEMBL
    G4WG39, M0ZJL6
    Conserved Domains (2) summary
    cd14703
    Location:185 → 235
    bZIP_plant_RF2; Basic leucine zipper (bZIP) domain of Plant RF2-like transcription factors: a DNA-binding and dimerization domain
    cl23720
    Location:198 → 283
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
Nucleotide Protein
Heading Accession and Version

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