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LOC101929770 uncharacterized LOC101929770 [ Homo sapiens (human) ]

Gene ID: 101929770, updated on 17-Sep-2024

Summary

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Gene symbol
LOC101929770
Gene description
uncharacterized LOC101929770
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in prostate (RPKM 7.0), testis (RPKM 1.4) and 17 other tissues See more
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Genomic context

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See LOC101929770 in Genome Data Viewer
Location:
6p21.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (44727936..44833110)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (44562787..44671990)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375074 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:44510389-44511019 Neighboring gene uncharacterized LOC105375075 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:44588544-44589128 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:44592119-44592626 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:44592627-44593135 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:44594661-44595168 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:44595169-44595676 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:44597530-44598150 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:44598773-44599392 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:44610400-44611599 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:44619143-44619644 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:44619645-44620144 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:44634844-44635352 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:44636371-44636878 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24641 Neighboring gene uncharacterized LOC124901325 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24642 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24643 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:44727363-44727954 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:44739389-44740008 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:44838634-44839257 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:44846566-44847066 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_91988 Neighboring gene SPT3 homolog, SAGA and STAGA complex component Neighboring gene ReSE screen-validated silencer GRCh37_chr6:44897835-44898036 Neighboring gene NUDT19 pseudogene 4 Neighboring gene MPRA-validated peak5818 silencer Neighboring gene MPRA-validated peak5819 silencer Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:45029844-45030504 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:45030505-45031165 Neighboring gene MPRA-validated peak5820 silencer Neighboring gene RNA binding motif protein 22 pseudogene 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    44727936..44833110
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_926855.3 RNA Sequence

  2. XR_007059598.1 RNA Sequence

  3. XR_007059596.1 RNA Sequence

  4. XR_007059597.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    44562787..44671990
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007076808.1 RNA Sequence

  2. XR_007076810.1 RNA Sequence

  3. XR_007076809.1 RNA Sequence

  4. XR_007076807.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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