U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

KCNMA1-AS1 KCNMA1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 101929328, updated on 17-Sep-2024

Summary

Official Symbol
KCNMA1-AS1provided by HGNC
Official Full Name
KCNMA1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:51213
See related
Ensembl:ENSG00000236467 AllianceGenome:HGNC:51213
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See KCNMA1-AS1 in Genome Data Viewer
Location:
10q22.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (76888044..76978593)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (77756765..77847349)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (78647802..78738351)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene leucine rich melanocyte differentiation associated Neighboring gene uncharacterized LOC112268057 Neighboring gene Sharpr-MPRA regulatory region 6857 Neighboring gene VISTA enhancer hs1683 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:78192871-78193568 Neighboring gene VISTA enhancer hs1434 Neighboring gene Sharpr-MPRA regulatory region 3593 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr10:78383798-78384997 Neighboring gene VISTA enhancer hs748 Neighboring gene NANOG hESC enhancer GRCh37_chr10:78538831-78539723 Neighboring gene OCT4 hESC enhancer GRCh37_chr10:78568996-78569497 Neighboring gene NANOG hESC enhancer GRCh37_chr10:78582741-78583242 Neighboring gene uncharacterized LOC124902466 Neighboring gene ATP synthase membrane subunit c locus 1 pseudogene 8 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:78733040-78734239 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3609 Neighboring gene potassium calcium-activated channel subfamily M alpha 1 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:78841288-78841844 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:78856955-78857142 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:78873963-78874931 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:78923175-78924374 Neighboring gene KCNMA1 antisense RNA 2 Neighboring gene NANOG hESC enhancer GRCh37_chr10:78961027-78961555 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:79058612-79058814 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:79074042-79074589 Neighboring gene NANOG hESC enhancer GRCh37_chr10:79084628-79085170 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:79110032-79111231 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:79135632-79136831 Neighboring gene KCNMA1 antisense RNA 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

EBI GWAS Catalog

Description
Genome wide association study identifies KCNMA1 contributing to human obesity.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_120655.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA634403, AC011439, BC030624, BX092192
    Related
    ENST00000458661.6

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    76888044..76978593
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    77756765..77847349
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)