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LINC02702 long intergenic non-protein coding RNA 2702 [ Homo sapiens (human) ]

Gene ID: 101929011, updated on 22-Oct-2024

Summary

Official Symbol
LINC02702provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2702provided by HGNC
Primary source
HGNC:HGNC:54217
See related
Ensembl:ENSG00000237937 AllianceGenome:HGNC:54217
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LASER
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC02702 in Genome Data Viewer
Location:
11q23.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (116639422..116658252)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (116653494..116672338)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (116510139..116528969)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:116369918-116370610 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:116375709-116376258 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:116377349-116377849 Neighboring gene long intergenic non-protein coding RNA 2151 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:116406562-116407062 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:116407063-116407563 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr11:116451429-116452038 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:116452039-116452648 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:116452758-116452938 Neighboring gene uncharacterized LOC107984372 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:116507034-116507534 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:116511441-116512270 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:116512271-116513100 Neighboring gene VISTA enhancer hs1632 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:116558341-116558903 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:116558904-116559465 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr11:116580386-116581272 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3921 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3922 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3923 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5554 Neighboring gene BUD13 homolog Neighboring gene BUD13 divergent transcript Neighboring gene ZPR1 zinc finger

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Common human genetic variants and HIV-1 susceptibility: a genome-wide survey in a homogeneous African population.
EBI GWAS Catalog

General gene information

Other Names

  • Lipid Associated Single nucleotide polymorphism gEne Region

Clone Names

  • AP000770.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135069.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP000770, BX093419
    Related
    ENST00000444123.6

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    116639422..116658252
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    116653494..116672338
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)