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LOC101928331 uncharacterized LOC101928331 [ Homo sapiens (human) ]

Gene ID: 101928331, updated on 17-Sep-2024

Summary

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Gene symbol
LOC101928331
Gene description
uncharacterized LOC101928331
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC101928331 in Genome Data Viewer
Location:
6p23
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (14431780..14516097)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (14304206..14392913)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901266 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:14297089-14297757 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:14298956-14299481 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr6:14301988-14302627 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:14302628-14303268 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:14330461-14330962 Neighboring gene Sharpr-MPRA regulatory region 8710 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:14381289-14381830 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:14381831-14382374 Neighboring gene uncharacterized LOC105374943 Neighboring gene uncharacterized LOC105374942 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr6:14441647-14442345 Neighboring gene NANOG hESC enhancer GRCh37_chr6:14450188-14450778 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:14472912-14473412 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:14473413-14473913 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:14474901-14475125 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:14508670-14509869 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:14540385-14540955 Neighboring gene uncharacterized LOC101928354 Neighboring gene Sharpr-MPRA regulatory region 399 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24051 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:14639937-14640920 Neighboring gene uncharacterized LOC102724463 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24052 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24053 Neighboring gene RNA, U6 small nuclear 793, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    14431780..14516097
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001743994.3 RNA Sequence

  2. XR_001743997.3 RNA Sequence

  3. XR_001743999.3 RNA Sequence

  4. XR_007059467.1 RNA Sequence

  5. XR_001743996.3 RNA Sequence

  6. XR_001743995.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    14304206..14392913
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007076567.1 RNA Sequence

  2. XR_007076570.1 RNA Sequence

  3. XR_007076571.1 RNA Sequence

  4. XR_007076569.1 RNA Sequence

  5. XR_007076568.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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