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LINC02669 long intergenic non-protein coding RNA 2669 [ Homo sapiens (human) ]

Gene ID: 101927880, updated on 17-Sep-2024

Summary

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Official Symbol
LINC02669provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2669provided by HGNC
Primary source
HGNC:HGNC:54155
See related
Ensembl:ENSG00000233321 AllianceGenome:HGNC:54155
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02669 in Genome Data Viewer
Location:
10p15.2
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (3433512..3502838, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (3437467..3506729, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (3475704..3545030, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376360 Neighboring gene uncharacterized LOC105376358 Neighboring gene uncharacterized LOC105376357 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:3441224-3441801 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:3441802-3442378 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:3462411-3462910 Neighboring gene uncharacterized LOC124902538 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:3494454-3495091 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:3498292-3498835 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:3499379-3499921 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:3499922-3500463 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:3509500-3510699 Neighboring gene uncharacterized LOC107984192 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:3528201-3529400 Neighboring gene uncharacterized LOC124902539 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:3568138-3568309 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:3572357-3573556 Neighboring gene Sharpr-MPRA regulatory region 1905 Neighboring gene uncharacterized LOC107984193

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_155743.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL356433, AL357833
    Related
    ENST00000660786.1

  2. NR_155744.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL357833
    Related
    ENST00000656403.1

  3. NR_155745.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL357833
    Related
    ENST00000665584.1

  4. NR_155746.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL357833
    Related
    ENST00000413993.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    3433512..3502838 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    3437467..3506729 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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