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LOC101927825 uncharacterized LOC101927825 [ Homo sapiens (human) ]

Gene ID: 101927825, updated on 22-Oct-2024

Summary

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Gene symbol
LOC101927825
Gene description
uncharacterized LOC101927825
See related
Ensembl:ENSG00000282556
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 3.4), fat (RPKM 2.6) and 22 other tissues See more
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Genomic context

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See LOC101927825 in Genome Data Viewer
Location:
11p15.4
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (6319141..6346369)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (6377985..6404816)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3098 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:6256113-6256803 Neighboring gene MPRA-validated peak1186 silencer Neighboring gene cyclic nucleotide gated channel subunit alpha 4 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr11:6291386-6292585 Neighboring gene cholecystokinin B receptor Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:6324771-6325489 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:6340407-6341144 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4336 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4337 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4338 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4339 Neighboring gene caveolae associated protein 3 Neighboring gene uncharacterized LOC124902623 Neighboring gene Sharpr-MPRA regulatory region 11421 Neighboring gene uncharacterized LOC124902624 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3099

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    6319141..6346369
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007062569.1 RNA Sequence

  2. XR_007062567.1 RNA Sequence

  3. XR_930992.4 RNA Sequence

  4. XR_930998.4 RNA Sequence

  5. XR_242848.4 RNA Sequence

    Related
    ENST00000649129.2

  6. XR_001748109.3 RNA Sequence

    Related
    ENST00000662112.3

  7. XR_007062568.1 RNA Sequence

  8. XR_007062570.1 RNA Sequence

  9. XR_001748108.3 RNA Sequence

  10. XR_007062566.1 RNA Sequence

  11. XR_001748105.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    6377985..6404816
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007082424.1 RNA Sequence

  2. XR_007082421.1 RNA Sequence

  3. XR_007082423.1 RNA Sequence

  4. XR_007082426.1 RNA Sequence

  5. XR_007082418.1 RNA Sequence

  6. XR_007082420.1 RNA Sequence

  7. XR_007082422.1 RNA Sequence

  8. XR_007082427.1 RNA Sequence

  9. XR_007082416.1 RNA Sequence

  10. XR_007082417.1 RNA Sequence

  11. XR_007082419.1 RNA Sequence

  12. XR_007082425.1 RNA Sequence

Nucleotide Protein
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