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LINC02165 long intergenic non-protein coding RNA 2165 [ Homo sapiens (human) ]

Gene ID: 101927629, updated on 22-Oct-2024

Summary

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Official Symbol
LINC02165provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2165provided by HGNC
Primary source
HGNC:HGNC:53026
See related
Ensembl:ENSG00000261014 AllianceGenome:HGNC:53026
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02165 in Genome Data Viewer
Location:
16q21
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (63730237..63755921)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (69518093..69543831)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371308 Neighboring gene UBE2F pseudogene 2 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:63422293-63422896 Neighboring gene ribosomal protein S15a pseudogene 34 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:63547840-63547987 Neighboring gene NANOG hESC enhancer GRCh37_chr16:63685874-63686502 Neighboring gene MPRA-validated peak2614 silencer Neighboring gene uncharacterized LOC105371309 Neighboring gene EBP like pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    63730237..63755921
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_933668.3 RNA Sequence

    Related
    ENST00000563061.2

  2. XR_933667.3 RNA Sequence

  3. XR_243458.5 RNA Sequence

    Related
    ENST00000656744.2

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    69518093..69543831
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007086552.1 RNA Sequence

  2. XR_007086553.1 RNA Sequence

  3. XR_007086554.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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