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LINC02070 long intergenic non-protein coding RNA 2070 [ Homo sapiens (human) ]

Gene ID: 101927494, updated on 17-Sep-2024

Summary

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Official Symbol
LINC02070provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2070provided by HGNC
Primary source
HGNC:HGNC:52916
See related
Ensembl:ENSG00000241328 AllianceGenome:HGNC:52916
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LINC02070 in Genome Data Viewer
Location:
3p12.1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (86481943..86496996)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (86553882..86568933)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (86531093..86546146)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102723364 Neighboring gene RNA, U6 small nuclear 1129, pseudogene Neighboring gene RN7SK pseudogene 284 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr3:86529880-86531079 Neighboring gene NANOG hESC enhancer GRCh37_chr3:86673295-86673796 Neighboring gene uncharacterized LOC101927518 Neighboring gene MPRA-validated peak4735 silencer Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:86925274-86925774 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:86940033-86940783 Neighboring gene uncharacterized LOC105377196 Neighboring gene MPRA-validated peak4737 silencer

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects. Deng X, et al. PLoS One, 2013. PMID 24324551, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_135563.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC035252
    Related
    ENST00000460586.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    86481943..86496996
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    86553882..86568933
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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