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LINC01581 long intergenic non-protein coding RNA 1581 [ Homo sapiens (human) ]

Gene ID: 101927112, updated on 17-Sep-2024

Summary

Official Symbol
LINC01581provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1581provided by HGNC
Primary source
HGNC:HGNC:51415
See related
Ensembl:ENSG00000259724 AllianceGenome:HGNC:51415
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01581 in Genome Data Viewer
Location:
15q26.2
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (93905403..94107938, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (91667307..91871002, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (94448632..94651167, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2207 Neighboring gene long intergenic non-protein coding RNA 1579 Neighboring gene long intergenic non-protein coding RNA 1580 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr15:94461979-94462560 Neighboring gene VISTA enhancer hs1686 Neighboring gene Sharpr-MPRA regulatory region 6915 Neighboring gene polyadenylate-binding protein 4-like Neighboring gene uncharacterized LOC105369203 Neighboring gene uncharacterized LOC105370984 Neighboring gene H3 histone pseudogene 40

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association studies and heritability estimates of body mass index related phenotypes in bangladeshi adults.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_120320.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC080032, BC043440
    Related
    ENST00000558874.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    93905403..94107938 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    91667307..91871002 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)