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LOC101927055 uncharacterized LOC101927055 [ Homo sapiens (human) ]

Gene ID: 101927055, updated on 17-Sep-2024

Summary

Gene symbol
LOC101927055
Gene description
uncharacterized LOC101927055
See related
Ensembl:ENSG00000237298
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in heart (RPKM 9.6), prostate (RPKM 1.6) and 2 other tissues See more
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Genomic context

See LOC101927055 in Genome Data Viewer
Location:
2q31.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (178776926..178779963)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (179259991..179263028)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (179641653..179644690)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene titin Neighboring gene uncharacterized LOC124906100 Neighboring gene uncharacterized LOC124907912 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:179588362-179589561 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:179591393-179592592 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:179593794-179594993 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:179595719-179596918 Neighboring gene uncharacterized LOC124906101 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:179611985-179613184 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:179638309-179639508 Neighboring gene coiled-coil domain containing 141 Neighboring gene RNA, U7 small nuclear 104 pseudogene Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:179735609-179736808 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:179738995-179740194 Neighboring gene uncharacterized LOC105373766

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_120594.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC023270, AK123298, AW444666
    Related
    ENST00000582038.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    178776926..178779963
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    179259991..179263028
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)