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TARDBP TAR DNA binding protein [ Macaca fascicularis (crab-eating macaque) ]

Gene ID: 101926677, updated on 12-Jun-2024

Summary

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Gene symbol
TARDBP
Gene description
TAR DNA binding protein
See related
Ensembl:ENSMFAG00000002750
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca fascicularis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See TARDBP in Genome Data Viewer
Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_05 current T2T-MFA8v1.0 (GCF_037993035.1) 1 NC_088375.1 (223774413..223794473, complement)
102 previous assembly MFA1912RKSv2 (GCF_012559485.2) 1 NC_052255.1 (211781147..211807889, complement)

Chromosome 1 - NC_088375.1Genomic Context describing neighboring genes Neighboring gene exosome component 10 Neighboring gene spermidine synthase Neighboring gene MBL associated serine protease 2 Neighboring gene uncharacterized LOC135968831 Neighboring gene cofilin-1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Rate of evolution in brain-expressed genes in humans and other primates. Wang HY, et al. PLoS Biol, 2007 Feb. PMID 17194215, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TAR DNA-binding protein 43

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_037993035.1-RS_2024_05

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference T2T-MFA8v1.0

Genomic

  1. NC_088375.1 Reference T2T-MFA8v1.0

    Range
    223774413..223794473 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015442706.3 → XP_015298192.1  TAR DNA-binding protein 43

    UniProtKB/TrEMBL
    A0A7N9DCN7, G8F4K2
    Related
    ENSMFAP00000035671.1
    Conserved Domains (3) summary
    pfam18694
    Location:4 → 77
    TDP43_N; Transactive response DNA-binding protein N-terminal domain
    cd12321
    Location:105 → 178
    RRM1_TDP43; RNA recognition motif 1 (RRM1) found in TAR DNA-binding protein 43 (TDP-43) and similar proteins
    cd12322
    Location:191 → 261
    RRM2_TDP43; RNA recognition motif 2 (RRM2) found in TAR DNA-binding protein 43 (TDP-43) and similar proteins

RNA

  1. XR_010581423.1 RNA Sequence

  2. XR_001487415.3 RNA Sequence

  3. XR_010581422.1 RNA Sequence

  4. XR_010581421.1 RNA Sequence

  5. XR_010581420.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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