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LOC101786720 protein PHOSPHATE STARVATION RESPONSE 3 [ Setaria italica (foxtail millet) ]

Gene ID: 101786720, updated on 21-Dec-2023

Summary

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Gene symbol
LOC101786720
Gene description
protein PHOSPHATE STARVATION RESPONSE 3
Locus tag
SETIT_006354mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Setaria italica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Genomic context

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See LOC101786720 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
8
Annotation release Status Assembly Chr Location
103 current Setaria_italica_v2.0 (GCF_000263155.2) IV NC_028453.1 (38758564..38762742)
101 previous assembly Setaria V1 (GCF_000263155.1) Unplaced Scaffold NW_004675964.1 (38758739..38762922)

Chromosome IV - NC_028453.1Genomic Context describing neighboring genes Neighboring gene squamosa promoter-binding-like protein 12 Neighboring gene uncharacterized LOC101786331 Neighboring gene uncharacterized LOC101752579 Neighboring gene uncharacterized LOC101752994

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein PHOSPHATE STARVATION RESPONSE 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Setaria italica Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Setaria_italica_v2.0 Primary Assembly

Genomic

  1. NC_028453.1 Reference Setaria_italica_v2.0 Primary Assembly

    Range
    38758564..38762742
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022825991.1 → XP_022681726.1  protein PHOSPHATE STARVATION RESPONSE 3 isoform X2

    Conserved Domains (2) summary
    TIGR01557
    Location:267 → 323
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    PLN03162
    Location:267 → 389
    PLN03162; golden-2 like transcription factor; Provisional

  2. XM_004966291.4 → XP_004966348.1  protein PHOSPHATE STARVATION RESPONSE 3 isoform X1

    UniProtKB/TrEMBL
    K3XWP6
    Conserved Domains (2) summary
    TIGR01557
    Location:267 → 323
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    pfam14379
    Location:356 → 401
    Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif
Nucleotide Protein Strain
Heading Accession and Version

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