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LOC101779340 bZIP transcription factor RISBZ5 [ Setaria italica (foxtail millet) ]

Gene ID: 101779340, updated on 21-Dec-2023

Summary

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Gene symbol
LOC101779340
Gene description
bZIP transcription factor RISBZ5
Locus tag
SETIT_007043mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Setaria italica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Genomic context

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See LOC101779340 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
6
Annotation release Status Assembly Chr Location
103 current Setaria_italica_v2.0 (GCF_000263155.2) IV NC_028453.1 (30527667..30529842)
101 previous assembly Setaria V1 (GCF_000263155.1) Unplaced Scaffold NW_004675964.1 (30527818..30529951)

Chromosome IV - NC_028453.1Genomic Context describing neighboring genes Neighboring gene SKP1-like protein 1A Neighboring gene pollen receptor-like kinase 4 Neighboring gene uncharacterized LOC111257026 Neighboring gene uncharacterized LOC105914269 Neighboring gene V-type proton ATPase catalytic subunit A-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bZIP transcription factor RISBZ5
Names
basic leucine zipper 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Setaria italica Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Setaria_italica_v2.0 Primary Assembly

Genomic

  1. NC_028453.1 Reference Setaria_italica_v2.0 Primary Assembly

    Range
    30527667..30529842
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004965585.3 → XP_004965642.1  bZIP transcription factor RISBZ5

    UniProtKB/TrEMBL
    K3XYN5, K3XYW5
    Conserved Domains (1) summary
    cd14702
    Location:124 → 174
    bZIP_plant_GBF1; Basic leucine zipper (bZIP) domain of Plant G-box binding factor 1 (GBF1)-like transcription factors: a DNA-binding and dimerization domain
Nucleotide Protein Strain
Heading Accession and Version

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