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LOC101778683 bZIP transcription factor RISBZ4 [ Setaria italica (foxtail millet) ]

Gene ID: 101778683, updated on 21-Dec-2023

Summary

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Gene symbol
LOC101778683
Gene description
bZIP transcription factor RISBZ4
Locus tag
SETIT_017778mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Setaria italica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Genomic context

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See LOC101778683 in Genome Data Viewer
Location:
chromosome: I
Exon count:
6
Annotation release Status Assembly Chr Location
103 current Setaria_italica_v2.0 (GCF_000263155.2) I NC_028450.1 (6342529..6345345, complement)
101 previous assembly Setaria V1 (GCF_000263155.1) Unplaced Scaffold NW_004675961.1 (6342534..6345336, complement)

Chromosome I - NC_028450.1Genomic Context describing neighboring genes Neighboring gene V-type proton ATPase catalytic subunit A Neighboring gene nitrate regulatory gene2 protein Neighboring gene probable cation transporter HKT6 Neighboring gene uncharacterized LOC101780165

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bZIP transcription factor RISBZ4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Setaria italica Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Setaria_italica_v2.0 Primary Assembly

Genomic

  1. NC_028450.1 Reference Setaria_italica_v2.0 Primary Assembly

    Range
    6342529..6345345 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004951683.3 → XP_004951740.1  bZIP transcription factor RISBZ4 isoform X1

    UniProtKB/TrEMBL
    K3YU95, K3YUA4
    Conserved Domains (1) summary
    cd14702
    Location:145 → 195
    bZIP_plant_GBF1; Basic leucine zipper (bZIP) domain of Plant G-box binding factor 1 (GBF1)-like transcription factors: a DNA-binding and dimerization domain

  2. XM_004951684.3 → XP_004951741.1  bZIP transcription factor RISBZ4 isoform X2

    UniProtKB/TrEMBL
    K3YUA0, K3YUA4
    Conserved Domains (1) summary
    cd14702
    Location:144 → 194
    bZIP_plant_GBF1; Basic leucine zipper (bZIP) domain of Plant G-box binding factor 1 (GBF1)-like transcription factors: a DNA-binding and dimerization domain
Nucleotide Protein Strain
Heading Accession and Version

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