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LOC101778562 probable WRKY transcription factor 31 [ Setaria italica (foxtail millet) ]

Gene ID: 101778562, updated on 21-Dec-2023

Summary

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Gene symbol
LOC101778562
Gene description
probable WRKY transcription factor 31
Locus tag
SETIT_002295mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Setaria italica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Genomic context

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See LOC101778562 in Genome Data Viewer
Location:
chromosome: V
Exon count:
2
Annotation release Status Assembly Chr Location
103 current Setaria_italica_v2.0 (GCF_000263155.2) V NC_028454.1 (31803797..31805112)
101 previous assembly Setaria V1 (GCF_000263155.1) Unplaced Scaffold NW_004675965.1 (31804630..31805865)

Chromosome V - NC_028454.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101778162 Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene SNF1-related protein kinase regulatory subunit gamma-1-like Neighboring gene translocase of chloroplast 159, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable WRKY transcription factor 31

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Setaria italica Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Setaria_italica_v2.0 Primary Assembly

Genomic

  1. NC_028454.1 Reference Setaria_italica_v2.0 Primary Assembly

    Range
    31803797..31805112
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012846235.2 → XP_012701689.1  probable WRKY transcription factor 31

    UniProtKB/TrEMBL
    K3XK72
    Conserved Domains (1) summary
    smart00774
    Location:128 → 186
    WRKY; DNA binding domain
Nucleotide Protein Strain
Heading Accession and Version

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