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LOC101772719 protein tesmin/TSO1-like CXC 5 [ Setaria italica (foxtail millet) ]

Gene ID: 101772719, updated on 21-Dec-2023

Summary

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Gene symbol
LOC101772719
Gene description
protein tesmin/TSO1-like CXC 5
Locus tag
SETIT_000730mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Setaria italica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Genomic context

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See LOC101772719 in Genome Data Viewer
Location:
chromosome: V
Exon count:
8
Annotation release Status Assembly Chr Location
103 current Setaria_italica_v2.0 (GCF_000263155.2) V NC_028454.1 (37547527..37553468, complement)
101 previous assembly Setaria V1 (GCF_000263155.1) Unplaced Scaffold NW_004675965.1 (37548367..37554269, complement)

Chromosome V - NC_028454.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111257423 Neighboring gene protein CURVATURE THYLAKOID 1C, chloroplastic Neighboring gene pentatricopeptide repeat-containing protein At2g33760 Neighboring gene malonate--CoA ligase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein tesmin/TSO1-like CXC 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Setaria italica Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Setaria_italica_v2.0 Primary Assembly

Genomic

  1. NC_028454.1 Reference Setaria_italica_v2.0 Primary Assembly

    Range
    37547527..37553468 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004969985.3 → XP_004970042.1  protein tesmin/TSO1-like CXC 5 isoform X2

    UniProtKB/TrEMBL
    A0A368RBC5
    Conserved Domains (1) summary
    pfam03638
    Location:241 → 276
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain

  2. XM_004969984.3 → XP_004970041.1  protein tesmin/TSO1-like CXC 5 isoform X1

    UniProtKB/TrEMBL
    K3XFR1
    Conserved Domains (1) summary
    pfam03638
    Location:241 → 276
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain
Nucleotide Protein Strain
Heading Accession and Version

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