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LOC101768861 myb family transcription factor PHL11 [ Setaria italica (foxtail millet) ]

Gene ID: 101768861, updated on 21-Dec-2023

Summary

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Gene symbol
LOC101768861
Gene description
myb family transcription factor PHL11
Locus tag
SETIT_010794mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Setaria italica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Genomic context

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See LOC101768861 in Genome Data Viewer
Location:
chromosome: VII
Exon count:
6
Annotation release Status Assembly Chr Location
103 current Setaria_italica_v2.0 (GCF_000263155.2) VII NC_028456.1 (28946769..28949481)
101 previous assembly Setaria V1 (GCF_000263155.1) Unplaced Scaffold NW_004675967.1 (28947037..28949681)

Chromosome VII - NC_028456.1Genomic Context describing neighboring genes Neighboring gene cell division cycle 20.2, cofactor of APC complex Neighboring gene clathrin interactor EPSIN 1 Neighboring gene uncharacterized LOC101768464 Neighboring gene ubiquinol oxidase 1a, mitochondrial Neighboring gene ubiquinol oxidase 1b, mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
myb family transcription factor PHL11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Setaria italica Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Setaria_italica_v2.0 Primary Assembly

Genomic

  1. NC_028456.1 Reference Setaria_italica_v2.0 Primary Assembly

    Range
    28946769..28949481
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004976625.3 → XP_004976682.1  myb family transcription factor PHL11

    UniProtKB/TrEMBL
    K3Y9A2
    Conserved Domains (2) summary
    TIGR01557
    Location:19 → 75
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    pfam14379
    Location:117 → 161
    Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif
Nucleotide Protein Strain
Heading Accession and Version

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