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LOC101767701 transcription factor bHLH113 [ Setaria italica (foxtail millet) ]

Gene ID: 101767701, updated on 21-Dec-2023

Summary

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Gene symbol
LOC101767701
Gene description
transcription factor bHLH113
Locus tag
SETIT_036666mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Setaria italica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Genomic context

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See LOC101767701 in Genome Data Viewer
Location:
chromosome: IX
Exon count:
7
Annotation release Status Assembly Chr Location
103 current Setaria_italica_v2.0 (GCF_000263155.2) IX NC_028458.1 (5024835..5028044, complement)
101 previous assembly Setaria V1 (GCF_000263155.1) Unplaced Scaffold NW_004675969.1 (5024648..5028034, complement)

Chromosome IX - NC_028458.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111255771 Neighboring gene uncharacterized protein At4g37920, chloroplastic Neighboring gene probable receptor-like protein kinase At5g61350 Neighboring gene origin of replication complex subunit 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH113

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Setaria italica Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Setaria_italica_v2.0 Primary Assembly

Genomic

  1. NC_028458.1 Reference Setaria_italica_v2.0 Primary Assembly

    Range
    5024835..5028044 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004981633.2 → XP_004981690.1  transcription factor bHLH113 isoform X2

    UniProtKB/TrEMBL
    K4ACQ9
    Conserved Domains (1) summary
    smart00353
    Location:168 → 216
    HLH; helix loop helix domain

  2. XM_012849219.2 → XP_012704673.1  transcription factor bHLH113 isoform X1

    UniProtKB/TrEMBL
    A0A368SEK2
    Conserved Domains (1) summary
    smart00353
    Location:168 → 216
    HLH; helix loop helix domain
Nucleotide Protein Strain
Heading Accession and Version

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