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LOC101767335 homeobox-leucine zipper protein ROC5 [ Setaria italica (foxtail millet) ]

Gene ID: 101767335, updated on 21-Dec-2023

Summary

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Gene symbol
LOC101767335
Gene description
homeobox-leucine zipper protein ROC5
Locus tag
SETIT_000344mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Setaria italica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Genomic context

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See LOC101767335 in Genome Data Viewer
Location:
chromosome: V
Exon count:
9
Annotation release Status Assembly Chr Location
103 current Setaria_italica_v2.0 (GCF_000263155.2) V NC_028454.1 (6742705..6749305)
101 previous assembly Setaria V1 (GCF_000263155.1) Unplaced Scaffold NW_004675965.1 (6743169..6749769)

Chromosome V - NC_028454.1Genomic Context describing neighboring genes Neighboring gene formin-like protein 3 Neighboring gene uncharacterized LOC101768281 Neighboring gene rust resistance kinase Lr10 Neighboring gene rust resistance kinase Lr10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox-leucine zipper protein ROC5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Setaria italica Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Setaria_italica_v2.0 Primary Assembly

Genomic

  1. NC_028454.1 Reference Setaria_italica_v2.0 Primary Assembly

    Range
    6742705..6749305
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004967944.4 → XP_004968001.1  homeobox-leucine zipper protein ROC5 isoform X1

    UniProtKB/TrEMBL
    K3XEM7
    Conserved Domains (2) summary
    cd08875
    Location:311 → 547
    START_ArGLABRA2_like; C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins
    pfam00046
    Location:102 → 155
    Homeobox; Homeobox domain

  2. XM_004967945.4 → XP_004968002.1  homeobox-leucine zipper protein ROC5 isoform X2

    UniProtKB/TrEMBL
    K3XEN0
    Conserved Domains (2) summary
    cd08875
    Location:310 → 546
    START_ArGLABRA2_like; C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins
    pfam00046
    Location:101 → 154
    Homeobox; Homeobox domain
Nucleotide Protein Strain
Heading Accession and Version

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