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LOC101759874 protein CUP-SHAPED COTYLEDON 1 [ Setaria italica (foxtail millet) ]

Gene ID: 101759874, updated on 21-Dec-2023

Summary

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Gene symbol
LOC101759874
Gene description
protein CUP-SHAPED COTYLEDON 1
Locus tag
SETIT_007886mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Setaria italica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Genomic context

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Location:
chromosome: IV
Exon count:
4
Annotation release Status Assembly Chr Location
103 current Setaria_italica_v2.0 (GCF_000263155.2) IV NC_028453.1 (23158239..23161178)
101 previous assembly Setaria V1 (GCF_000263155.1) Unplaced Scaffold NW_004675964.1 (23158626..23161001)

Chromosome IV - NC_028453.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101758514 Neighboring gene uncharacterized LOC111257039 Neighboring gene uncharacterized LOC101759598 Neighboring gene uncharacterized LOC106804307 Neighboring gene proline-, glutamic acid- and leucine-rich protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein CUP-SHAPED COTYLEDON 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Setaria italica Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Setaria_italica_v2.0 Primary Assembly

Genomic

  1. NC_028453.1 Reference Setaria_italica_v2.0 Primary Assembly

    Range
    23158239..23161178
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004965377.2 → XP_004965434.1  protein CUP-SHAPED COTYLEDON 1

    UniProtKB/TrEMBL
    K3Y124
    Conserved Domains (1) summary
    pfam02365
    Location:26 → 149
    NAM; No apical meristem (NAM) protein
Nucleotide Protein Strain
Heading Accession and Version

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