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LOC101757452 zinc finger CCCH domain-containing protein 5 [ Setaria italica (foxtail millet) ]

Gene ID: 101757452, updated on 21-Dec-2023

Summary

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Gene symbol
LOC101757452
Gene description
zinc finger CCCH domain-containing protein 5
Locus tag
SETIT_001422mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Setaria italica
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Genomic context

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See LOC101757452 in Genome Data Viewer
Location:
chromosome: V
Exon count:
7
Annotation release Status Assembly Chr Location
103 current Setaria_italica_v2.0 (GCF_000263155.2) V NC_028454.1 (5067070..5072780)
101 previous assembly Setaria V1 (GCF_000263155.1) Unplaced Scaffold NW_004675965.1 (5067521..5073221)

Chromosome V - NC_028454.1Genomic Context describing neighboring genes Neighboring gene zinc finger CCCH domain-containing protein 6 Neighboring gene uncharacterized LOC111257306 Neighboring gene flowering-promoting factor 1-like protein 1 Neighboring gene protein RALF-like 22

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger CCCH domain-containing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Setaria italica Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Setaria_italica_v2.0 Primary Assembly

Genomic

  1. NC_028454.1 Reference Setaria_italica_v2.0 Primary Assembly

    Range
    5067070..5072780
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004967755.4 → XP_004967812.1  zinc finger CCCH domain-containing protein 5

    UniProtKB/TrEMBL
    K3XHQ0
    Conserved Domains (1) summary
    pfam00642
    Location:290 → 316
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Nucleotide Protein Strain
Heading Accession and Version

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