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Gphn gephyrin [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101725958, updated on 8-Mar-2024

Summary

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Gene symbol
Gphn
Gene description
gephyrin
See related
Ensembl:ENSHGLG00000012912
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
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Genomic context

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See Gphn in Genome Data Viewer
Location:
chromosome: Un
Exon count:
28
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624734.1 (33871664..34483770, complement)

NW_004624734.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 2 subunit 3, X-linked pseudogene Neighboring gene protein associated with LIN7 1, MAGUK p55 family member Neighboring gene golgi associated RAB2 interactor family member 2 Neighboring gene axin interactor, dorsalization-associated protein pseudogene Neighboring gene uncharacterized protein C14orf53 homolog Neighboring gene uncharacterized LOC110346831

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004624734 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables molybdopterin molybdotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Mo-molybdopterin cofactor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in establishment of synaptic specificity at neuromuscular junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in gamma-aminobutyric acid receptor clustering IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycine receptor clustering IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in molybdenum incorporation into molybdenum-molybdopterin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in postsynaptic neurotransmitter receptor diffusion trapping IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in dendrite IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic specialization IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gephyrin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624734.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    33871664..34483770 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021247567.1 → XP_021103226.1  gephyrin isoform X2

    Related
    ENSHGLP00000018054.1, ENSHGLT00000018231.1
    Conserved Domains (2) summary
    cd00886
    Location:15 → 182
    MogA_MoaB; MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, ...
    cd00887
    Location:419 → 825
    MoeA; MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and ...

  2. XM_004837378.2 → XP_004837435.1  gephyrin isoform X6

    See identical proteins and their annotated locations for XP_004837435.1

    Related
    ENSHGLP00000018056.1, ENSHGLT00000018233.1
    Conserved Domains (2) summary
    cd00886
    Location:15 → 169
    MogA_MoaB; MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, ...
    cd00887
    Location:327 → 733
    MoeA; MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and ...

  3. XM_004837377.2 → XP_004837434.1  gephyrin isoform X4

    See identical proteins and their annotated locations for XP_004837434.1

    Related
    ENSHGLP00000018057.1, ENSHGLT00000018234.1
    Conserved Domains (2) summary
    cd00886
    Location:15 → 169
    MogA_MoaB; MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, ...
    cd00887
    Location:360 → 766
    MoeA; MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and ...

  4. XM_004837376.2 → XP_004837433.1  gephyrin isoform X3

    UniProtKB/TrEMBL
    A0A0P6JE43
    Related
    ENSHGLP00000018055.1, ENSHGLT00000018232.1
    Conserved Domains (3) summary
    COG0303
    Location:357 → 766
    MoeA; Molybdopterin biosynthesis enzyme [Coenzyme transport and metabolism]
    cd00886
    Location:15 → 169
    MogA_MoaB; MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, ...
    cd00887
    Location:363 → 769
    MoeA; MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and ...

  5. XM_021247574.1 → XP_021103233.1  gephyrin isoform X5

    Conserved Domains (2) summary
    cd00886
    Location:35 → 183
    MogA_MoaB; MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, ...
    cd00887
    Location:341 → 747
    MoeA; MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and ...

  6. XM_021247564.1 → XP_021103223.1  gephyrin isoform X1

    Conserved Domains (2) summary
    cd00886
    Location:35 → 183
    MogA_MoaB; MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, ...
    cd00887
    Location:420 → 826
    MoeA; MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and ...
Nucleotide Protein
Heading Accession and Version

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