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Lum lumican [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101724760, updated on 8-Mar-2024

Summary

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Gene symbol
Lum
Gene description
lumican
See related
Ensembl:ENSHGLG00000009566
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
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Genomic context

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See Lum in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624750.1 (15553400..15560746)

NW_004624750.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110349208 Neighboring gene decorin Neighboring gene keratocan Neighboring gene epiphycan

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004624750 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lumican

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624750.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    15553400..15560746
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004844979.2 → XP_004845036.1  lumican

    UniProtKB/TrEMBL
    A0A0P6IY91
    Related
    ENSHGLP00000013382.1, ENSHGLT00000013522.1
    Conserved Domains (4) summary
    smart00013
    Location:36 → 69
    LRRNT; Leucine rich repeat N-terminal domain
    cd00116
    Location:65 → 266
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:67 → 90
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:65 → 127
    LRR_8; Leucine rich repeat
Nucleotide Protein
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Gene LinkOut

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