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Crnkl1 crooked neck pre-mRNA splicing factor 1 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101724733, updated on 8-Mar-2024

Summary

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Gene symbol
Crnkl1
Gene description
crooked neck pre-mRNA splicing factor 1
Locus tag
GW7_00706
See related
Ensembl:ENSHGLG00000010856
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
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Genomic context

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See Crnkl1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624741.1 (20565686..20581708, complement)

NW_004624741.1Genomic Context describing neighboring genes Neighboring gene Ras and Rab interactor 2 Neighboring gene N-alpha-acetyltransferase 20, NatB catalytic subunit Neighboring gene cilia and flagella associated protein 61 Neighboring gene uncharacterized LOC110348347 Neighboring gene INSM transcriptional repressor 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004624741 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing reveals insights into physiology and longevity of the naked mole rat. Kim EB, et al. Nature, 2011 Oct 12. PMID 21993625, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spliceosomal complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Prp19 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of post-mRNA release spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
crooked neck-like protein 1
Names
Crooked neck-like protein 1
crooked neck pre-mRNA splicing factor-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624741.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    20565686..20581708 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004840894.3 → XP_004840951.1  crooked neck-like protein 1

    See identical proteins and their annotated locations for XP_004840951.1

    UniProtKB/TrEMBL
    G5CBB9
    Related
    ENSHGLP00000015159.1, ENSHGLT00000015313.1
    Conserved Domains (4) summary
    pfam02184
    Location:196 → 227
    HAT; HAT (Half-A-TPR) repeat
    smart00386
    Location:95 → 127
    HAT; HAT (Half-A-TPR) repeats
    COG5107
    Location:130 → 525
    RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
    sd00006
    Location:84 → 109
    TPR; TPR repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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