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Flrt2 fibronectin leucine rich transmembrane protein 2 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101722934, updated on 8-Mar-2024

Summary

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Gene symbol
Flrt2
Gene description
fibronectin leucine rich transmembrane protein 2
Locus tag
GW7_17637
See related
Ensembl:ENSHGLG00000009944
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
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Genomic context

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See Flrt2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624734.1 (16587367..16674998, complement)

NW_004624734.1Genomic Context describing neighboring genes Neighboring gene dimethyladenosine transferase 1, mitochondrial-like Neighboring gene polyadenylate-binding protein-interacting protein 1 pseudogene Neighboring gene uncharacterized LOC110345999 Neighboring gene nuclease-sensitive element-binding protein 1 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004624734 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing reveals insights into physiology and longevity of the naked mole rat. Kim EB, et al. Nature, 2011 Oct 12. PMID 21993625, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat transmembrane protein FLRT2
Names
Leucine-rich repeat transmembrane protein FLRT2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624734.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    16587367..16674998 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004837098.2 → XP_004837155.1  leucine-rich repeat transmembrane protein FLRT2

    See identical proteins and their annotated locations for XP_004837155.1

    UniProtKB/TrEMBL
    A0A0P6JGA8, G5B514
    Related
    ENSHGLP00000013914.1, ENSHGLT00000014057.1
    Conserved Domains (5) summary
    TIGR00864
    Location:282 → 359
    PCC; polycystin cation channel protein
    sd00031
    Location:65 → 86
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:90 → 110
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00041
    Location:426 → 494
    fn3; Fibronectin type III domain
    cl26018
    Location:31 → 265
    NEL; C-terminal novel E3 ligase, LRR-interacting

  2. XM_021245459.1 → XP_021101118.1  leucine-rich repeat transmembrane protein FLRT2

    UniProtKB/TrEMBL
    A0A0P6JGA8, G5B514
    Conserved Domains (5) summary
    TIGR00864
    Location:282 → 359
    PCC; polycystin cation channel protein
    sd00031
    Location:65 → 86
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:90 → 110
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00041
    Location:426 → 494
    fn3; Fibronectin type III domain
    cl26018
    Location:31 → 265
    NEL; C-terminal novel E3 ligase, LRR-interacting

  3. XM_004837099.3 → XP_004837156.1  leucine-rich repeat transmembrane protein FLRT2

    See identical proteins and their annotated locations for XP_004837156.1

    UniProtKB/TrEMBL
    A0A0P6JGA8, G5B514
    Conserved Domains (5) summary
    TIGR00864
    Location:282 → 359
    PCC; polycystin cation channel protein
    sd00031
    Location:65 → 86
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:90 → 110
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00041
    Location:426 → 494
    fn3; Fibronectin type III domain
    cl26018
    Location:31 → 265
    NEL; C-terminal novel E3 ligase, LRR-interacting
Nucleotide Protein
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