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Cry1 cryptochrome circadian regulator 1 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101719696, updated on 8-Mar-2024

Summary

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Gene symbol
Cry1
Gene description
cryptochrome circadian regulator 1
See related
Ensembl:ENSHGLG00000007148
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
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Genomic context

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See Cry1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624750.1 (2465999..2529251)

NW_004624750.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110349118 Neighboring gene uncharacterized LOC106009406 Neighboring gene cold shock domain-containing protein E1 pseudogene Neighboring gene mitochondrial transcription termination factor 2 Neighboring gene transmembrane protein 263 Neighboring gene RIC8 guanine nucleotide exchange factor B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004624750 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables FAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in circadian regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in entrainment of circadian clock by photoperiod IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cryptochrome-1
Names
cryptochrome 1 (photolyase-like)
cryptochrome circadian clock 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624750.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    2465999..2529251
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021258363.1 → XP_021114022.1  cryptochrome-1 isoform X1

    Conserved Domains (2) summary
    pfam03441
    Location:343 → 541
    FAD_binding_7; FAD binding domain of DNA photolyase
    cl27275
    Location:6 → 546
    DNA_photolyase; DNA photolyase

  2. XM_021258364.1 → XP_021114023.1  cryptochrome-1 isoform X2

    Conserved Domains (2) summary
    pfam03441
    Location:343 → 541
    FAD_binding_7; FAD binding domain of DNA photolyase
    cl27275
    Location:6 → 546
    DNA_photolyase; DNA photolyase

  3. XM_004844794.2 → XP_004844851.1  cryptochrome-1 isoform X3

    Conserved Domains (3) summary
    COG0415
    Location:6 → 491
    PhrB; Deoxyribodipyrimidine photolyase [Replication, recombination and repair]
    pfam00875
    Location:5 → 153
    DNA_photolyase; DNA photolyase
    pfam03441
    Location:213 → 486
    FAD_binding_7; FAD binding domain of DNA photolyase

  4. XM_004844795.2 → XP_004844852.1  cryptochrome-1 isoform X4

    Related
    ENSHGLP00000009964.1, ENSHGLT00000010074.1
    Conserved Domains (3) summary
    COG0415
    Location:6 → 491
    PhrB; Deoxyribodipyrimidine photolyase [Replication, recombination and repair]
    pfam00875
    Location:5 → 153
    DNA_photolyase; DNA photolyase
    pfam03441
    Location:213 → 486
    FAD_binding_7; FAD binding domain of DNA photolyase
Nucleotide Protein
Heading Accession and Version

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