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Trmt5 tRNA methyltransferase 5 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101718155, updated on 8-Mar-2024

Summary

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Gene symbol
Trmt5
Gene description
tRNA methyltransferase 5
See related
Ensembl:ENSHGLG00000013713
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
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Genomic context

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See Trmt5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624734.1 (40143073..40154257)

NW_004624734.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110346849 Neighboring gene solute carrier family 38 member 6 Neighboring gene probable ATP-dependent RNA helicase DDX41 pseudogene Neighboring gene MNAT1 component of CDK activating kinase Neighboring gene fanconi-associated nuclease 1 pseudogene Neighboring gene uncharacterized LOC110346591

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004624734 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mitochondrial tRNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tRNA N1-guanine methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA (guanine(37)-N1)-methyltransferase
Names
tRNA methyltransferase 5 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624734.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    40143073..40154257
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004837438.3 → XP_004837495.1  tRNA (guanine(37)-N1)-methyltransferase isoform X1

    Conserved Domains (2) summary
    COG2520
    Location:94 → 466
    Trm5; tRNA G37 N-methylase Trm5 [Translation, ribosomal structure and biogenesis]
    pfam12847
    Location:295 → 362
    Methyltransf_18; Methyltransferase domain

  2. XM_021247875.1 → XP_021103534.1  tRNA (guanine(37)-N1)-methyltransferase isoform X2

    Related
    ENSHGLP00000019121.1, ENSHGLT00000019312.1
    Conserved Domains (1) summary
    cl27846
    Location:38 → 410
    Met_10; Met-10+ like-protein
Nucleotide Protein
Heading Accession and Version

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