U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Ttc8 tetratricopeptide repeat domain 8 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101717584, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
Ttc8
Gene description
tetratricopeptide repeat domain 8
Locus tag
GW7_11810
See related
Ensembl:ENSHGLG00000013781
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Ttc8 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624734.1 (13437234..13497269, complement)

NW_004624734.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110345963 Neighboring gene uncharacterized LOC110346783 Neighboring gene baculoviral IAP repeat-containing protein 8-like Neighboring gene EMAP like 5 Neighboring gene phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN pseudogene Neighboring gene eukaryotic translation initiation factor 2 subunit 1 pseudogene

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_004624734 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. FRAMA: from RNA-seq data to annotated mRNA assemblies. Bens M, et al. BMC Genomics, 2016 Jan 14. PMID 26763976, Free PMC Article
  2. Genome sequencing reveals insights into physiology and longevity of the naked mole rat. Kim EB, et al. Nature, 2011 Oct 12. PMID 21993625, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in non-motile cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of BBSome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ciliary basal body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in non-motile cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
tetratricopeptide repeat protein 8

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001310243.1 → NP_001297172.1  tetratricopeptide repeat protein 8

    See identical proteins and their annotated locations for NP_001297172.1

    Status: PROVISIONAL

    Source sequence(s)
    KM486793
    UniProtKB/TrEMBL
    A0A0A7HRU7
    Related
    ENSHGLP00000019204.1, ENSHGLT00000019395.1
    Conserved Domains (2) summary
    COG0457
    Location:234 → 500
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:353 → 381
    TPR; TPR repeat [structural motif]

RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624734.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    13437234..13497269 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.