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Syn3 synapsin III [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101715067, updated on 8-Mar-2024

Summary

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Gene symbol
Syn3
Gene description
synapsin III
Locus tag
GW7_07164
See related
Ensembl:ENSHGLG00000017888
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Also known as
Synapsin-3
Orthologs
human mouse all
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Genomic context

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See Syn3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624750.1 (1663309..1976738)

NW_004624750.1Genomic Context describing neighboring genes Neighboring gene poly(rC)-binding protein 2 pseudogene Neighboring gene uncharacterized LOC110349156 Neighboring gene TIMP metallopeptidase inhibitor 3 Neighboring gene uncharacterized LOC106009407 Neighboring gene F-box protein 7 Neighboring gene BPI fold containing family C

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004624750 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neurotransmitter secretion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in synaptic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synapsin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624750.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    1663309..1976738
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013072249.2 → XP_012927703.1  synapsin-3 isoform X1

    See identical proteins and their annotated locations for XP_012927703.1

    UniProtKB/TrEMBL
    G5BPE4
    Related
    ENSHGLP00000025111.1, ENSHGLT00000025333.1
    Conserved Domains (4) summary
    pfam02078
    Location:93 → 189
    Synapsin; Synapsin, N-terminal domain
    pfam02750
    Location:192 → 394
    Synapsin_C; Synapsin, ATP binding domain
    pfam10581
    Location:1 → 29
    Synapsin_N; Synapsin N-terminal
    pfam15394
    Location:463 → 555
    DUF4616; Domain of unknown function (DUF4616)

  2. XM_021258341.1 → XP_021114000.1  synapsin-3 isoform X3

    UniProtKB/TrEMBL
    A0A0P6K1X7
    Conserved Domains (3) summary
    pfam02078
    Location:93 → 189
    Synapsin; Synapsin, N-terminal domain
    pfam10581
    Location:1 → 29
    Synapsin_N; Synapsin N-terminal
    cl17255
    Location:192 → 394
    CPSase_L_D2; Carbamoyl-phosphate synthase L chain, ATP binding domain

  3. XM_021258340.1 → XP_021113999.1  synapsin-3 isoform X2

    Conserved Domains (4) summary
    pfam02078
    Location:93 → 189
    Synapsin; N-terminal domain
    pfam10581
    Location:1 → 29
    Synapsin_N; Synapsin N-terminal
    cl17255
    Location:192 → 394
    CPSase_L_D2; Carbamoyl-phosphate synthase L chain, ATP binding domain
    cl25764
    Location:400 → 533
    PAT1; Topoisomerase II-associated protein PAT1

  4. XM_021258342.1 → XP_021114001.1  synapsin-3 isoform X4

    Conserved Domains (3) summary
    pfam02078
    Location:93 → 189
    Synapsin; Synapsin, N-terminal domain
    pfam10581
    Location:1 → 29
    Synapsin_N; Synapsin N-terminal
    cl17255
    Location:192 → 242
    CPSase_L_D2; Carbamoyl-phosphate synthase L chain, ATP binding domain

  5. XM_021258343.1 → XP_021114002.1  synapsin-3 isoform X5

    Conserved Domains (3) summary
    pfam02078
    Location:93 → 189
    Synapsin; Synapsin, N-terminal domain
    pfam10581
    Location:1 → 29
    Synapsin_N; Synapsin N-terminal
    cl17255
    Location:192 → 236
    CPSase_L_D2; Carbamoyl-phosphate synthase L chain, ATP binding domain

  6. XM_004844778.3 → XP_004844835.1  synapsin-3 isoform X1

    See identical proteins and their annotated locations for XP_004844835.1

    UniProtKB/TrEMBL
    G5BPE4
    Conserved Domains (4) summary
    pfam02078
    Location:93 → 189
    Synapsin; Synapsin, N-terminal domain
    pfam02750
    Location:192 → 394
    Synapsin_C; Synapsin, ATP binding domain
    pfam10581
    Location:1 → 29
    Synapsin_N; Synapsin N-terminal
    pfam15394
    Location:463 → 555
    DUF4616; Domain of unknown function (DUF4616)

RNA

  1. XR_002394920.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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