U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Col20a1 collagen type XX alpha 1 chain [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101714112, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
Col20a1
Gene description
collagen type XX alpha 1 chain
See related
Ensembl:ENSHGLG00000011780
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Col20a1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
36
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624741.1 (28986897..29018995)

NW_004624741.1Genomic Context describing neighboring genes Neighboring gene sodium/potassium transporting ATPase interacting 4 Neighboring gene ARF GTPase activating protein 1 Neighboring gene cholinergic receptor nicotinic alpha 4 subunit Neighboring gene uncharacterized LOC106009086

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_004624741 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
collagen alpha-1(XX) chain

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624741.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    28986897..29018995
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021255230.1 → XP_021110889.1  collagen alpha-1(XX) chain isoform X1

    Conserved Domains (4) summary
    pfam01391
    Location:1186 → 1225
    Collagen; Collagen triple helix repeat (20 copies)
    cd01482
    Location:228 → 391
    vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
    pfam00041
    Location:800 → 878
    fn3; Fibronectin type III domain
    cl22861
    Location:901 → 1095
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

  2. XM_021255233.1 → XP_021110892.1  collagen alpha-1(XX) chain isoform X3

    Conserved Domains (4) summary
    pfam01391
    Location:1186 → 1225
    Collagen; Collagen triple helix repeat (20 copies)
    cd01482
    Location:228 → 391
    vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
    pfam00041
    Location:800 → 878
    fn3; Fibronectin type III domain
    cl22861
    Location:901 → 1095
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

  3. XM_021255236.1 → XP_021110895.1  collagen alpha-1(XX) chain isoform X6

    Related
    ENSHGLP00000016465.1, ENSHGLT00000016634.1
    Conserved Domains (4) summary
    pfam01391
    Location:1202 → 1282
    Collagen; Collagen triple helix repeat (20 copies)
    cd01482
    Location:228 → 391
    vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
    pfam00041
    Location:800 → 878
    fn3; Fibronectin type III domain
    cl22861
    Location:901 → 1095
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

  4. XM_021255239.1 → XP_021110898.1  collagen alpha-1(XX) chain isoform X8

    Conserved Domains (5) summary
    pfam01391
    Location:1208 → 1264
    Collagen; Collagen triple helix repeat (20 copies)
    cd01482
    Location:228 → 391
    vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
    pfam00041
    Location:800 → 878
    fn3; Fibronectin type III domain
    pfam09606
    Location:1165 → 1411
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cl22861
    Location:901 → 1095
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

  5. XM_021255232.1 → XP_021110891.1  collagen alpha-1(XX) chain isoform X2

    Conserved Domains (4) summary
    pfam01391
    Location:1185 → 1224
    Collagen; Collagen triple helix repeat (20 copies)
    cd01482
    Location:228 → 391
    vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
    pfam00041
    Location:800 → 878
    fn3; Fibronectin type III domain
    cl22861
    Location:900 → 1094
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

  6. XM_021255240.1 → XP_021110899.1  collagen alpha-1(XX) chain isoform X9

    Conserved Domains (4) summary
    pfam01391
    Location:1201 → 1281
    Collagen; Collagen triple helix repeat (20 copies)
    cd01482
    Location:228 → 391
    vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
    pfam00041
    Location:800 → 878
    fn3; Fibronectin type III domain
    cl22861
    Location:900 → 1094
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

  7. XM_021255234.1 → XP_021110893.1  collagen alpha-1(XX) chain isoform X4

    Conserved Domains (4) summary
    pfam01391
    Location:1127 → 1166
    Collagen; Collagen triple helix repeat (20 copies)
    cd01482
    Location:169 → 332
    vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
    pfam00041
    Location:741 → 819
    fn3; Fibronectin type III domain
    cl22861
    Location:842 → 1036
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

  8. XM_021255231.1 → XP_021110890.1  collagen alpha-1(XX) chain isoform X1

    Conserved Domains (4) summary
    pfam01391
    Location:1186 → 1225
    Collagen; Collagen triple helix repeat (20 copies)
    cd01482
    Location:228 → 391
    vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
    pfam00041
    Location:800 → 878
    fn3; Fibronectin type III domain
    cl22861
    Location:901 → 1095
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

  9. XM_021255235.1 → XP_021110894.1  collagen alpha-1(XX) chain isoform X5

    Conserved Domains (4) summary
    pfam01391
    Location:1186 → 1225
    Collagen; Collagen triple helix repeat (20 copies)
    cd01482
    Location:228 → 391
    vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
    pfam00041
    Location:800 → 878
    fn3; Fibronectin type III domain
    cl22861
    Location:901 → 1095
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

  10. XM_021255237.1 → XP_021110896.1  collagen alpha-1(XX) chain isoform X7

    Conserved Domains (4) summary
    pfam01391
    Location:1186 → 1225
    Collagen; Collagen triple helix repeat (20 copies)
    cd01482
    Location:228 → 391
    vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
    pfam00041
    Location:800 → 878
    fn3; Fibronectin type III domain
    cl22861
    Location:901 → 1095
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

  11. XM_021255238.1 → XP_021110897.1  collagen alpha-1(XX) chain isoform X7

    Conserved Domains (4) summary
    pfam01391
    Location:1186 → 1225
    Collagen; Collagen triple helix repeat (20 copies)
    cd01482
    Location:228 → 391
    vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
    pfam00041
    Location:800 → 878
    fn3; Fibronectin type III domain
    cl22861
    Location:901 → 1095
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

RNA

  1. XR_002393559.1 RNA Sequence

  2. XR_002393560.1 RNA Sequence

  3. XR_002393561.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.