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Vapb VAMP associated protein B and C [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101711978, updated on 8-Mar-2024

Summary

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Gene symbol
Vapb
Gene description
VAMP associated protein B and C
Locus tag
GW7_10212
See related
Ensembl:ENSHGLG00000011907
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
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Genomic context

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See Vapb in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624741.1 (24716835..24767806)

NW_004624741.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein phosphatase 4 regulatory subunit 1-like Neighboring gene RAB22A, member RAS oncogene family Neighboring gene uncharacterized LOC101711739 Neighboring gene APC down-regulated 1 like Neighboring gene uncharacterized LOC110348352

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004624741 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing reveals insights into physiology and longevity of the naked mole rat. Kim EB, et al. Nature, 2011 Oct 12. PMID 21993625, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables FFAT motif binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum-plasma membrane tethering IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vesicle-associated membrane protein-associated protein B/C
Names
Vesicle-associated membrane protein-associated protein B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624741.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    24716835..24767806
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004840939.3 → XP_004840996.1  vesicle-associated membrane protein-associated protein B/C isoform X1

    See identical proteins and their annotated locations for XP_004840996.1

    UniProtKB/TrEMBL
    G5AUM1
    Related
    ENSHGLP00000016646.1, ENSHGLT00000016816.1
    Conserved Domains (1) summary
    pfam00635
    Location:8 → 111
    Motile_Sperm; MSP (Major sperm protein) domain

  2. XM_004840940.2 → XP_004840997.1  vesicle-associated membrane protein-associated protein B/C isoform X2

    Conserved Domains (1) summary
    pfam00635
    Location:8 → 81
    Motile_Sperm; MSP (Major sperm protein) domain
Nucleotide Protein
Heading Accession and Version

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