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Ift88 intraflagellar transport 88 [ Heterocephalus glaber (naked mole-rat) ]

Gene ID: 101707870, updated on 8-Mar-2024

Summary

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Gene symbol
Ift88
Gene description
intraflagellar transport 88
See related
Ensembl:ENSHGLG00000010561
Gene type
protein coding
RefSeq status
MODEL
Organism
Heterocephalus glaber
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Heterocephalus
Orthologs
human mouse all
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Genomic context

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See Ift88 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
102 current HetGla_female_1.0 (GCF_000247695.1) Unplaced Scaffold NW_004624776.1 (16954368..17086377, complement)

NW_004624776.1Genomic Context describing neighboring genes Neighboring gene EEF1A lysine methyltransferase 1 Neighboring gene vacuole membrane protein 1 pseudogene Neighboring gene interleukin 17D Neighboring gene AMMECR1-like protein pseudogene Neighboring gene crystallin lambda 1 Neighboring gene uncharacterized LOC110343942

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004624776 Unplaced Scaffold Reference HetGla_female_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables kinesin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in inner ear receptor cell stereocilium organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intraciliary transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in kidney development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in non-motile cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in centriole IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ciliary basal body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ciliary base IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in non-motile cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
intraflagellar transport protein 88 homolog
Names
intraflagellar transport 88 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Heterocephalus glaber Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference HetGla_female_1.0 Primary Assembly

Genomic

  1. NW_004624776.1 Reference HetGla_female_1.0 Primary Assembly

    Range
    16954368..17086377 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021236373.1 → XP_021092032.1  intraflagellar transport protein 88 homolog isoform X2

    UniProtKB/TrEMBL
    G5BKV6
    Conserved Domains (4) summary
    COG0457
    Location:181 → 325
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:466 → 494
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:215 → 285
    TPR_12; Tetratricopeptide repeat
    cl26002
    Location:404 → 673
    TPR_11; TPR repeat

  2. XM_013075877.2 → XP_012931331.1  intraflagellar transport protein 88 homolog isoform X3

    Conserved Domains (7) summary
    COG0457
    Location:427 → 687
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:485 → 513
    TPR; TPR repeat [structural motif]
    cd15832
    Location:500 → 548
    SNAP; TPR repeat [structural motif]
    pfam00515
    Location:238 → 265
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:199 → 260
    TPR_11; TPR repeat
    pfam13424
    Location:234 → 304
    TPR_12; Tetratricopeptide repeat
    cl24038
    Location:499 → 723
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family

  3. XM_004854873.2 → XP_004854930.1  intraflagellar transport protein 88 homolog isoform X1

    UniProtKB/TrEMBL
    A0A0P6JWA8, G5BKV6
    Related
    ENSHGLP00000014783.1, ENSHGLT00000014928.1
    Conserved Domains (7) summary
    COG0457
    Location:427 → 687
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:485 → 513
    TPR; TPR repeat [structural motif]
    cd15832
    Location:500 → 548
    SNAP; TPR repeat [structural motif]
    pfam00515
    Location:238 → 265
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:199 → 260
    TPR_11; TPR repeat
    pfam13424
    Location:234 → 304
    TPR_12; Tetratricopeptide repeat
    cl24038
    Location:499 → 723
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family

  4. XM_013075880.2 → XP_012931334.1  intraflagellar transport protein 88 homolog isoform X5

    Conserved Domains (6) summary
    sd00006
    Location:362 → 390
    TPR; TPR repeat [structural motif]
    cd15832
    Location:377 → 425
    SNAP; TPR repeat [structural motif]
    pfam00515
    Location:115 → 142
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:361 → 425
    TPR_11; TPR repeat
    pfam13424
    Location:111 → 181
    TPR_12; Tetratricopeptide repeat
    cl24038
    Location:376 → 600
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family

  5. XM_013075879.2 → XP_012931333.1  intraflagellar transport protein 88 homolog isoform X4

    See identical proteins and their annotated locations for XP_012931333.1

    Conserved Domains (7) summary
    COG0457
    Location:427 → 687
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:485 → 513
    TPR; TPR repeat [structural motif]
    cd15832
    Location:500 → 548
    SNAP; TPR repeat [structural motif]
    pfam00515
    Location:238 → 265
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:199 → 260
    TPR_11; TPR repeat
    pfam13424
    Location:234 → 304
    TPR_12; Tetratricopeptide repeat
    cl24038
    Location:499 → 688
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family

RNA

  1. XR_002386189.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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