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SCHLAP1 SWI/SNF complex antagonist associated with prostate cancer 1 [ Homo sapiens (human) ]

Gene ID: 101669767, updated on 17-Sep-2024

Summary

Official Symbol
SCHLAP1provided by HGNC
Official Full Name
SWI/SNF complex antagonist associated with prostate cancer 1provided by HGNC
Primary source
HGNC:HGNC:48603
See related
Ensembl:ENSG00000281131 MIM:615568; AllianceGenome:HGNC:48603
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PCAT11; PCAT114; LINC00913
Expression
Low expression observed in reference dataset See more
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Genomic context

See SCHLAP1 in Genome Data Viewer
Location:
2q31.3
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (180692104..180916939)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (181175628..181406564)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (181556831..181781666)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105373769 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:181293207-181293431 Neighboring gene uncharacterized LOC105373770 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:181449937-181450113 Neighboring gene Sharpr-MPRA regulatory region 10987 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:181520993-181522192 Neighboring gene uncharacterized LOC105373771 Neighboring gene MPRA-validated peak3955 silencer Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:181678325-181679524 Neighboring gene ferritin heavy chain 1 pseudogene 20 Neighboring gene ribosomal protein L27a pseudogene 3 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12155 Neighboring gene UBE2E3 divergent transcript Neighboring gene ubiquitin conjugating enzyme E2 E3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Other Names

  • SWI/SNF complex antagonist associated with prostate cancer 1 (non-protein coding)
  • Second Chromosome Locus Associated with Prostate 1
  • long intergenic non-protein coding RNA 913
  • prostate cancer associated transcript 11

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_104319.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the primary transcript.
    Source sequence(s)
    JX117418
    Related
    ENST00000629145.1
  2. NR_104320.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an exon, compared to variant 1.
    Source sequence(s)
    JX117419
  3. NR_104321.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks two exons, compared to variant 1.
    Source sequence(s)
    JX117420
  4. NR_104322.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) includes two additional exons, compared to variant 1.
    Source sequence(s)
    JX117421
  5. NR_104323.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) includes an additional exon, compared to variant 1.
    Source sequence(s)
    JX117422
  6. NR_104324.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) includes an additional exon and lacks an exon, compared to variant 1.
    Source sequence(s)
    JX117423
  7. NR_104325.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (7) includes an additional exon, compared to variant 1.
    Source sequence(s)
    JX117424

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    180692104..180916939
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    181175628..181406564
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)