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LOC101268858 DNAJ protein JJJ1 homolog [ Solanum lycopersicum (tomato) ]

Gene ID: 101268858, updated on 1-Nov-2024

Summary

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Gene symbol
LOC101268858
Gene description
DNAJ protein JJJ1 homolog
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See LOC101268858 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 3 NC_090802.1 (61783672..61785538)
103 previous assembly SL3.0 (GCF_000188115.4) 3 NC_015440.3 (66407022..66408305)

Chromosome 3 - NC_090802.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC138347310 Neighboring gene ATP synthase subunit gamma, mitochondrial Neighboring gene DNAJ protein JJJ1 homolog Neighboring gene histone deacetylase 5 Neighboring gene PHD finger-containing protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNAJ protein JJJ1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLM_r2.1 Primary Assembly

Genomic

  1. NC_090802.1 Reference SLM_r2.1 Primary Assembly

    Range
    61783672..61785538
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004236452.5 → XP_004236500.1  DNAJ protein JJJ1 homolog

    UniProtKB/TrEMBL
    A0A3Q7GGK6
    Conserved Domains (3) summary
    sd00020
    Location:340 → 362
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00226
    Location:47 → 113
    DnaJ; DnaJ domain
    pfam12171
    Location:338 → 363
    zf-C2H2_jaz; Zinc-finger double-stranded RNA-binding
Nucleotide Protein
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