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LOC101268319 transcription factor bHLH62 [ Solanum lycopersicum (tomato) ]

Gene ID: 101268319, updated on 1-Nov-2024

Summary

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Gene symbol
LOC101268319
Gene description
transcription factor bHLH62
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See LOC101268319 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 9 NC_090808.1 (69271111..69274077, complement)
103 previous assembly SL3.0 (GCF_000188115.4) 9 NC_015446.3 (72362051..72364780, complement)

Chromosome 9 - NC_090808.1Genomic Context describing neighboring genes Neighboring gene cysteine proteinase inhibitor B Neighboring gene kinesin-like protein KIN-12B Neighboring gene DNA topoisomerase 3-beta Neighboring gene cytochrome b561 and DOMON domain-containing protein At3g25290

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH62

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLM_r2.1 Primary Assembly

Genomic

  1. NC_090808.1 Reference SLM_r2.1 Primary Assembly

    Range
    69271111..69274077 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004247975.5 → XP_004248023.1  transcription factor bHLH62

    UniProtKB/TrEMBL
    A0A3Q7I8U4
    Conserved Domains (1) summary
    smart00353
    Location:246 → 295
    HLH; helix loop helix domain
Nucleotide Protein
Heading Accession and Version

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