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SPT transcription factor SPATULA [ Solanum lycopersicum (tomato) ]

Gene ID: 101266791, updated on 1-Nov-2024

Summary

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Gene symbol
SPT
Gene description
transcription factor SPATULA
Gene type
protein coding
RefSeq status
INFERRED
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
Also known as
SlySPT
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Genomic context

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See SPT in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 2 NC_090801.1 (70524934..70527461)
103 previous assembly SL3.0 (GCF_000188115.4) 2 NC_015439.3 (54826845..54829360)

Chromosome 2 - NC_090801.1Genomic Context describing neighboring genes Neighboring gene caffeoyl-CoA O-methyltransferase Neighboring gene caffeoyl-CoA O-methyltransferase-like Neighboring gene nicotinate phosphoribosyltransferase 2 Neighboring gene DNA polymerase alpha catalytic subunit Neighboring gene PI-PLC X domain-containing protein At5g67130

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expression and function of the bHLH genes ALCATRAZ and SPATULA in selected Solanaceae species. Ortiz-Ramírez CI, et al. Plant J, 2019 Aug. PMID 31009131
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor SPATULA

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001374389.1 → NP_001361318.1  transcription factor SPATULA

    Status: INFERRED

    Source sequence(s)
    AEKE03003138
    Conserved Domains (1) summary
    cd11445
    Location:142 → 204
    bHLH_AtPIF_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana phytochrome interacting factors (PIFs) and similar proteins

RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLM_r2.1 Primary Assembly

Genomic

  1. NC_090801.1 Reference SLM_r2.1 Primary Assembly

    Range
    70524934..70527461
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010317661.4 → XP_010315963.1  transcription factor SPATULA isoform X1

    UniProtKB/TrEMBL
    K4BDC4
    Conserved Domains (1) summary
    smart00353
    Location:148 → 196
    HLH; helix loop helix domain
Nucleotide Protein
Heading Accession and Version

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