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LOC101265827 NAC domain-containing protein 78 [ Solanum lycopersicum (tomato) ]

Gene ID: 101265827, updated on 1-Nov-2024

Summary

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Gene symbol
LOC101265827
Gene description
NAC domain-containing protein 78
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See LOC101265827 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 5 NC_090804.1 (68351446..68356492, complement)
103 previous assembly SL3.0 (GCF_000188115.4) 5 NC_015442.3 (65951960..65956920, complement)

Chromosome 5 - NC_090804.1Genomic Context describing neighboring genes Neighboring gene protein BTR1 Neighboring gene putative glycine-rich cell wall structural protein 1 Neighboring gene NAC domain containing protein 50 Neighboring gene monocopper oxidase-like protein SKU5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
NAC domain-containing protein 78

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLM_r2.1 Primary Assembly

Genomic

  1. NC_090804.1 Reference SLM_r2.1 Primary Assembly

    Range
    68351446..68356492 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004239662.5 → XP_004239710.1  NAC domain-containing protein 78

    UniProtKB/TrEMBL
    K4C2M3
    Conserved Domains (1) summary
    pfam02365
    Location:13 → 54
    NAM; No apical meristem (NAM) protein
Nucleotide Protein
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