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LOC101263275 transcription factor bHLH81 [ Solanum lycopersicum (tomato) ]

Gene ID: 101263275, updated on 1-Nov-2024

Summary

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Gene symbol
LOC101263275
Gene description
transcription factor bHLH81
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See LOC101263275 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 11 NC_090810.1 (53204369..53207589, complement)
103 previous assembly SL3.0 (GCF_000188115.4) 11 NC_015448.3 (47535419..47538608, complement)

Chromosome 11 - NC_090810.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101266789 Neighboring gene uncharacterized LOC138339695 Neighboring gene uncharacterized LOC112940327 Neighboring gene beta-amyrin 28-monooxygenase-like Neighboring gene DNA damage-repair/toleration protein DRT100

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH81

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLM_r2.1 Primary Assembly

Genomic

  1. NC_090810.1 Reference SLM_r2.1 Primary Assembly

    Range
    53204369..53207589 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004250809.5 → XP_004250857.1  transcription factor bHLH81

    UniProtKB/TrEMBL
    A0A3Q7JMX0
    Conserved Domains (1) summary
    smart00353
    Location:378 → 427
    HLH; helix loop helix domain
Nucleotide Protein
Heading Accession and Version

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