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LOC101253425 protein tesmin/TSO1-like CXC 2 [ Solanum lycopersicum (tomato) ]

Gene ID: 101253425, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101253425
Gene description
protein tesmin/TSO1-like CXC 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See LOC101253425 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
10
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 9 NC_015446.3 (68642159..68648758)
102 previous assembly SL2.50 (GCF_000188115.3) 9 NC_015446.2 (68216823..68223584)

Chromosome 9 - NC_015446.3Genomic Context describing neighboring genes Neighboring gene protein RDM1 Neighboring gene protein XRI1 Neighboring gene kinase interacting protein SD1 Neighboring gene 40S ribosomal protein S3a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein tesmin/TSO1-like CXC 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015446.3 Reference SL3.0 Primary Assembly

    Range
    68642159..68648758
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010328386.3 → XP_010326688.1  protein tesmin/TSO1-like CXC 2 isoform X2

    Conserved Domains (1) summary
    pfam03638
    Location:525 → 562
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain

  2. XM_004247627.4 → XP_004247675.2  protein tesmin/TSO1-like CXC 2 isoform X1

    UniProtKB/TrEMBL
    K4CVM7
    Conserved Domains (1) summary
    pfam03638
    Location:525 → 562
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain
Nucleotide Protein
Heading Accession and Version

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