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LOC101253264 NAC domain-containing protein 54 [ Solanum lycopersicum (tomato) ]

Gene ID: 101253264, updated on 1-Nov-2024

Summary

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Gene symbol
LOC101253264
Gene description
NAC domain-containing protein 54
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See LOC101253264 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 3 NC_090802.1 (57344881..57349615, complement)
103 previous assembly SL3.0 (GCF_000188115.4) 3 NC_015440.3 (61965020..61969758, complement)

Chromosome 3 - NC_090802.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104646482 Neighboring gene uncharacterized LOC101252965 Neighboring gene homeobox-leucine zipper protein HDG11 Neighboring gene cyclic nucleotide gated channel 15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
NAC domain-containing protein 54
Names
NAC domain-containing protein 86

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLM_r2.1 Primary Assembly

Genomic

  1. NC_090802.1 Reference SLM_r2.1 Primary Assembly

    Range
    57344881..57349615 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004235333.5 → XP_004235381.1  NAC domain-containing protein 54 isoform X2

    UniProtKB/TrEMBL
    K4BJN4
    Conserved Domains (1) summary
    pfam02365
    Location:9 → 50
    NAM; No apical meristem (NAM) protein

  2. XM_010320037.4 → XP_010318339.1  NAC domain-containing protein 54 isoform X1

    Conserved Domains (1) summary
    pfam02365
    Location:9 → 50
    NAM; No apical meristem (NAM) protein
Nucleotide Protein
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