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LOC101251993 transcription factor TGA9 [ Solanum lycopersicum (tomato) ]

Gene ID: 101251993, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101251993
Gene description
transcription factor TGA9
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See LOC101251993 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
13
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 6 NC_015443.3 (46083884..46089683)
102 previous assembly SL2.50 (GCF_000188115.3) 6 NC_015443.2 (45942429..45948203)

Chromosome 6 - NC_015443.3Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L10a-1 Neighboring gene transmembrane 9 superfamily member 5 Neighboring gene uncharacterized LOC101251591 Neighboring gene uncharacterized LOC101251296

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor TGA9
Names
transcription factor TGA2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015443.3 Reference SL3.0 Primary Assembly

    Range
    46083884..46089683
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010324133.3 → XP_010322435.1  transcription factor TGA9 isoform X2

    Conserved Domains (3) summary
    cd14686
    Location:193 → 244
    bZIP; coiled coil [structural motif]
    pfam14144
    Location:273 → 347
    DOG1; Seed dormancy control
    cl21462
    Location:192 → 244
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

  2. XM_004241272.4 → XP_004241320.1  transcription factor TGA9 isoform X1

    UniProtKB/TrEMBL
    A0A3Q7H0D9
    Conserved Domains (2) summary
    cd14708
    Location:198 → 250
    bZIP_HBP1b-like; Basic leucine zipper (bZIP) domain of uncharaterized BZIP transcription factors with similarity to Triticum aestivum HBP-1b: a DNA-binding and dimerization domain
    pfam14144
    Location:279 → 353
    DOG1; Seed dormancy control

  3. XM_026031692.1 → XP_025887477.1  transcription factor TGA9 isoform X4

    Conserved Domains (3) summary
    cd14686
    Location:171 → 222
    bZIP; coiled coil [structural motif]
    pfam14144
    Location:251 → 325
    DOG1; Seed dormancy control
    cl21462
    Location:170 → 222
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

  4. XM_010324134.3 → XP_010322436.1  transcription factor TGA9 isoform X3

    Conserved Domains (3) summary
    cd14686
    Location:177 → 228
    bZIP; coiled coil [structural motif]
    pfam14144
    Location:257 → 331
    DOG1; Seed dormancy control
    cl21462
    Location:176 → 228
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
Nucleotide Protein
Heading Accession and Version

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