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LOC101248731 zinc finger protein JACKDAW [ Solanum lycopersicum (tomato) ]

Gene ID: 101248731, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101248731
Gene description
zinc finger protein JACKDAW
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See LOC101248731 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
3
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 10 NC_015447.3 (63958847..63961342, complement)
102 previous assembly SL2.50 (GCF_000188115.3) 10 NC_015447.2 (63834578..63837087, complement)

Chromosome 10 - NC_015447.3Genomic Context describing neighboring genes Neighboring gene small RNA degrading nuclease 1-like Neighboring gene BAG family molecular chaperone regulator 5, mitochondrial-like Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene peroxidase 44-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein JACKDAW

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015447.3 Reference SL3.0 Primary Assembly

    Range
    63958847..63961342 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004249444.3 → XP_004249492.1  zinc finger protein JACKDAW

    UniProtKB/TrEMBL
    K4D3K4
    Conserved Domains (1) summary
    sd00017
    Location:69 → 89
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
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