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LOC101247294 nuclear transcription factor Y subunit A-7-like [ Solanum lycopersicum (tomato) ]

Gene ID: 101247294, updated on 1-Nov-2024

Summary

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Gene symbol
LOC101247294
Gene description
nuclear transcription factor Y subunit A-7-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See LOC101247294 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 12 NC_090811.1 (2757712..2763551, complement)
103 previous assembly SL3.0 (GCF_000188115.4) 12 NC_015449.3 (2340146..2345415, complement)

Chromosome 12 - NC_090811.1Genomic Context describing neighboring genes Neighboring gene WD repeat-containing protein Neighboring gene long chain acyl-CoA synthetase 8-like Neighboring gene SNF7 family protein Neighboring gene RING-H2 finger protein ATL57-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCAAT-binding factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear transcription factor Y subunit A-5-like; nuclear transcription factor Y subunit A-7-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLM_r2.1 Primary Assembly

Genomic

  1. NC_090811.1 Reference SLM_r2.1 Primary Assembly

    Range
    2757712..2763551 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010315462.4 → XP_010313764.1  nuclear transcription factor Y subunit A-7-like isoform X3

    See identical proteins and their annotated locations for XP_010313764.1

    UniProtKB/TrEMBL
    K4DBZ3
    Conserved Domains (1) summary
    pfam02045
    Location:118 → 172
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  2. XM_010315461.4 → XP_010313763.1  nuclear transcription factor Y subunit A-7-like isoform X3

    See identical proteins and their annotated locations for XP_010313763.1

    UniProtKB/TrEMBL
    K4DBZ3
    Conserved Domains (1) summary
    pfam02045
    Location:118 → 172
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  3. XM_010315460.4 → XP_010313762.1  nuclear transcription factor Y subunit A-7-like isoform X3

    See identical proteins and their annotated locations for XP_010313762.1

    UniProtKB/TrEMBL
    K4DBZ3
    Conserved Domains (1) summary
    pfam02045
    Location:118 → 172
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  4. XM_069292822.1 → XP_069148923.1  nuclear transcription factor Y subunit A-7-like isoform X4

  5. XM_069292821.1 → XP_069148922.1  nuclear transcription factor Y subunit A-7-like isoform X4

  6. XM_069292823.1 → XP_069148924.1  nuclear transcription factor Y subunit A-7-like isoform X4

  7. XM_004251633.5 → XP_004251681.1  nuclear transcription factor Y subunit A-7-like isoform X1

    Conserved Domains (1) summary
    pfam02045
    Location:148 → 202
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

  8. XM_010315459.4 → XP_010313761.1  nuclear transcription factor Y subunit A-5-like isoform X2

    Conserved Domains (2) summary
    COG5224
    Location:31 → 190
    HAP2; CCAAT-binding factor, subunit B [Transcription]
    pfam02045
    Location:130 → 184
    CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
Nucleotide Protein
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